Publications

Cooperberg MR, Erho N, Chan JM, Feng FY-C, Cowan JE, Kolisnik T, et al. The diverse genomic landscape of low-risk prostate cancer. JCO. 2017 Feb  20;35(6_suppl):72–72. [PDF]

Cormier, N., Kolisnik, T., & Bieda, M. (2016). Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis. BMC Bioinformatics, 17(1), 270. doi:10.1186/s12859-016-1125-3 [PDF]

Nguyen, P. L., Martin, N. E., Choeurng, V., Palmer-Aronsten, B., Kolisnik, T., Beard, C. J., … Feng, F. Y. (2017). Utilization of biopsy-based genomic classifier to predict distant metastasis after definitive radiation and short-course ADT for intermediate and high-risk prostate cancer. Nature: Prostate Cancer and Prostatic Diseases, (October 2016), 1–7. doi:10.1038/pcan.2016.58 [PDF]

Nguyen PL, Martin NE, Palmer-Aronsten BJ, Choeurng V, Kolisnik T, Beard CJ, et al. The Use of a Biopsy-Based Genomic Classifier to Predict the Risk of Distant Metastasis After Definitive Radiation and Short-Course Androgen Deprivation Therapy for Intermediate- and High-Risk Prostate Cancer. International Journal of Radiation Oncology. 96(2):S113–4. [PDF]

Nguyen, P. L., Haddad, Z., Ross, A. E., Martin, N. E., Deheshi, S., Kolisnik, T., … Catto, J. (2017). Ability of a Genomic Classifier to Predict Metastasis and Prostate Cancer-specific Mortality after Radiation or Surgery based on Needle Biopsy Specimens. European Urology, 1–8. https://doi.org/10.1016/j.eururo.2017.05.009. [PDF]

R. LeighM. M. MostafaE. M. KingC. F. RiderS. ShahC. DumonceauxS. L. TravesA. McWhaeT. KolisnikC. KooiD. M. SlaterM. M. KellyM. BiedaA. Miller-LarssonR. NewtonAn inhaled dose of budesonide induces genes involved in transcription and signaling in the human airways: enhancement of anti- and proinflammatory effector genes. Pharma Res Per4(4), 2016, e00243. doi: 10.1002/prp2.243 [PDF]

T. McPhillips, T. Song, T. Kolisnik, S. Aulenbach, K. Belhajjame, K. Bocinsky, Y. Cao, J. Cheney, F. Chirigati, S. Dey, J. Freire, C. Jones, J. Hanken, K. W. Kintigh, T. A. Kohler, D. Koop, J. A. Macklin, P. Missier, M. Schild- hauer, C. Schwalm, Y. Wei, M. Bieda, and B. Ludascher. YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts. International Journal of Digital Curation (IJDC), 10(1):298–313, 2015. Presented at IDCC’15, 30 Euston Square, London, UK. doi:10.2218/ijdc.v10i1.370 [PDF]